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Align_corners switch in Volumes
Summary:
Porting this commit by davnov134 .
93a3a62800 (diff-a8e107ebe039de52ca112ac6ddfba6ebccd53b4f53030b986e13f019fe57a378)
Capability to interpret world/local coordinates with various align_corners semantics.
Reviewed By: bottler
Differential Revision: D51855420
fbshipit-source-id: 834cd220c25d7f0143d8a55ba880da5977099dd6
This commit is contained in:
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fbc6725f03
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@ -98,6 +98,13 @@ def save_model(model, stats, fl, optimizer=None, cfg=None):
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return flstats, flmodel, flopt
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def save_stats(stats, fl, cfg=None):
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flstats = get_stats_path(fl)
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logger.info("saving model stats to %s" % flstats)
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stats.save(flstats)
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return flstats
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def load_model(fl, map_location: Optional[dict]):
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flstats = get_stats_path(fl)
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flmodel = get_model_path(fl)
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@ -291,6 +291,7 @@ def add_pointclouds_to_volumes(
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mask=mask,
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mode=mode,
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rescale_features=rescale_features,
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align_corners=initial_volumes.get_align_corners(),
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_python=_python,
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)
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@ -310,6 +311,7 @@ def add_points_features_to_volume_densities_features(
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grid_sizes: Optional[torch.LongTensor] = None,
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rescale_features: bool = True,
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_python: bool = False,
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align_corners: bool = True,
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) -> Tuple[torch.Tensor, torch.Tensor]:
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"""
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Convert a batch of point clouds represented with tensors of per-point
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@ -356,6 +358,7 @@ def add_points_features_to_volume_densities_features(
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output densities are just summed without rescaling, so
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you may need to rescale them afterwards.
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_python: Set to True to use a pure Python implementation.
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align_corners: as for grid_sample.
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Returns:
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volume_features: Output volume of shape `(minibatch, feature_dim, D, H, W)`
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volume_densities: Occupancy volume of shape `(minibatch, 1, D, H, W)`
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@ -409,7 +412,7 @@ def add_points_features_to_volume_densities_features(
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grid_sizes,
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1.0, # point_weight
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mask,
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True, # align_corners
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align_corners, # align_corners
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splat,
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)
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@ -382,9 +382,9 @@ class VolumeSampler(torch.nn.Module):
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rays_densities = torch.nn.functional.grid_sample(
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volumes_densities,
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rays_points_local_flat,
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align_corners=True,
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mode=self._sample_mode,
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padding_mode=self._padding_mode,
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align_corners=self._volumes.get_align_corners(),
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)
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# permute the dimensions & reshape densities after sampling
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@ -400,9 +400,9 @@ class VolumeSampler(torch.nn.Module):
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rays_features = torch.nn.functional.grid_sample(
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volumes_features,
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rays_points_local_flat,
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align_corners=True,
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mode=self._sample_mode,
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padding_mode=self._padding_mode,
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align_corners=self._volumes.get_align_corners(),
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)
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# permute the dimensions & reshape features after sampling
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@ -85,7 +85,7 @@ class Volumes:
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are linearly interpolated over the spatial dimensions of the volume.
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- Note that the convention is the same as for the 5D version of the
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`torch.nn.functional.grid_sample` function called with
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`align_corners==True`.
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the same value of `align_corners` argument.
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- Note that the local coordinate convention of `Volumes`
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(+X = left to right, +Y = top to bottom, +Z = away from the user)
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is *different* from the world coordinate convention of the
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@ -143,7 +143,7 @@ class Volumes:
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torch.nn.functional.grid_sample(
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v.densities(),
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v.get_coord_grid(world_coordinates=False),
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align_corners=True,
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align_corners=align_corners,
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) == v.densities(),
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i.e. sampling the volume at trivial local coordinates
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@ -157,6 +157,7 @@ class Volumes:
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features: Optional[_TensorBatch] = None,
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voxel_size: _VoxelSize = 1.0,
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volume_translation: _Translation = (0.0, 0.0, 0.0),
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align_corners: bool = True,
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) -> None:
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"""
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Args:
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@ -186,6 +187,10 @@ class Volumes:
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b) a Tensor of shape (3,)
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c) a Tensor of shape (minibatch, 3)
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d) a Tensor of shape (1,) (square voxels)
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**align_corners**: If set (default), the coordinates of the corner voxels are
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exactly −1 or +1 in the local coordinate system. Otherwise, the coordinates
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correspond to the centers of the corner voxels. Cf. the namesake argument to
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`torch.nn.functional.grid_sample`.
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"""
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# handle densities
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@ -206,6 +211,7 @@ class Volumes:
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voxel_size=voxel_size,
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volume_translation=volume_translation,
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device=self.device,
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align_corners=align_corners,
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)
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# handle features
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@ -336,6 +342,13 @@ class Volumes:
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return None
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return self._features_densities_list(features_)
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def get_align_corners(self) -> bool:
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"""
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Return whether the corners of the voxels should be aligned with the
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image pixels.
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"""
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return self.locator._align_corners
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def _features_densities_list(self, x: torch.Tensor) -> List[torch.Tensor]:
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"""
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Retrieve the list representation of features/densities.
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@ -576,7 +589,7 @@ class VolumeLocator:
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are linearly interpolated over the spatial dimensions of the volume.
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- Note that the convention is the same as for the 5D version of the
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`torch.nn.functional.grid_sample` function called with
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`align_corners==True`.
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the same value of `align_corners` argument.
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- Note that the local coordinate convention of `VolumeLocator`
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(+X = left to right, +Y = top to bottom, +Z = away from the user)
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is *different* from the world coordinate convention of the
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@ -634,7 +647,7 @@ class VolumeLocator:
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torch.nn.functional.grid_sample(
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v.densities(),
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v.get_coord_grid(world_coordinates=False),
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align_corners=True,
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align_corners=align_corners,
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) == v.densities(),
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i.e. sampling the volume at trivial local coordinates
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@ -651,6 +664,7 @@ class VolumeLocator:
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device: torch.device,
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voxel_size: _VoxelSize = 1.0,
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volume_translation: _Translation = (0.0, 0.0, 0.0),
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align_corners: bool = True,
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):
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"""
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**batch_size** : Batch size of the underlying grids
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@ -674,15 +688,21 @@ class VolumeLocator:
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b) a Tensor of shape (3,)
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c) a Tensor of shape (minibatch, 3)
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d) a Tensor of shape (1,) (square voxels)
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**align_corners**: If set (default), the coordinates of the corner voxels are
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exactly −1 or +1 in the local coordinate system. Otherwise, the coordinates
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correspond to the centers of the corner voxels. Cf. the namesake argument to
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`torch.nn.functional.grid_sample`.
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"""
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self.device = device
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self._batch_size = batch_size
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self._grid_sizes = self._convert_grid_sizes2tensor(grid_sizes)
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self._resolution = tuple(torch.max(self._grid_sizes.cpu(), dim=0).values)
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self._align_corners = align_corners
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# set the local_to_world transform
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self._set_local_to_world_transform(
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voxel_size=voxel_size, volume_translation=volume_translation
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voxel_size=voxel_size,
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volume_translation=volume_translation,
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)
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def _convert_grid_sizes2tensor(
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@ -806,8 +826,17 @@ class VolumeLocator:
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grid_sizes = self.get_grid_sizes()
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# generate coordinate axes
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def corner_coord_adjustment(r):
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return 0.0 if self._align_corners else 1.0 / r
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vol_axes = [
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torch.linspace(-1.0, 1.0, r, dtype=torch.float32, device=self.device)
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torch.linspace(
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-1.0 + corner_coord_adjustment(r),
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1.0 - corner_coord_adjustment(r),
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r,
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dtype=torch.float32,
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device=self.device,
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)
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for r in (de, he, wi)
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]
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@ -312,6 +312,49 @@ class TestVolumes(TestCaseMixin, unittest.TestCase):
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).permute(0, 2, 3, 4, 1)
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self.assertClose(grid_world_resampled, grid_world, atol=1e-7)
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for align_corners in [True, False]:
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v_trivial = Volumes(densities=densities, align_corners=align_corners)
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# check the case with x_world=(0,0,0)
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pts_world = torch.zeros(
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num_volumes, 1, 3, device=device, dtype=torch.float32
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)
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pts_local = v_trivial.world_to_local_coords(pts_world)
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pts_local_expected = torch.zeros_like(pts_local)
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self.assertClose(pts_local, pts_local_expected)
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# check the case with x_world=(-2, 3, -2)
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pts_world_tuple = [-2, 3, -2]
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pts_world = torch.tensor(
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pts_world_tuple, device=device, dtype=torch.float32
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)[None, None].repeat(num_volumes, 1, 1)
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pts_local = v_trivial.world_to_local_coords(pts_world)
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pts_local_expected = torch.tensor(
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[-1, 1, -1], device=device, dtype=torch.float32
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)[None, None].repeat(num_volumes, 1, 1)
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self.assertClose(pts_local, pts_local_expected)
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# # check that the central voxel has coords x_world=(0, 0, 0) and x_local(0, 0, 0)
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grid_world = v_trivial.get_coord_grid(world_coordinates=True)
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grid_local = v_trivial.get_coord_grid(world_coordinates=False)
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for grid in (grid_world, grid_local):
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x0 = grid[0, :, :, 2, 0]
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y0 = grid[0, :, 3, :, 1]
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z0 = grid[0, 2, :, :, 2]
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for coord_line in (x0, y0, z0):
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self.assertClose(
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coord_line, torch.zeros_like(coord_line), atol=1e-7
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)
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# resample grid_world using grid_sampler with local coords
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# -> make sure the resampled version is the same as original
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grid_world_resampled = torch.nn.functional.grid_sample(
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grid_world.permute(0, 4, 1, 2, 3),
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grid_local,
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align_corners=align_corners,
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).permute(0, 2, 3, 4, 1)
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self.assertClose(grid_world_resampled, grid_world, atol=1e-7)
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def test_coord_grid_convention_heterogeneous(
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self, num_channels=4, dtype=torch.float32
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):
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