diff --git a/scripts/lora_part_merge.py b/scripts/qwen_omni_merge.py
similarity index 64%
rename from scripts/lora_part_merge.py
rename to scripts/qwen_omni_merge.py
index 5000cece..3c75d77a 100644
--- a/scripts/lora_part_merge.py
+++ b/scripts/qwen_omni_merge.py
@@ -19,7 +19,7 @@ import shutil
 
 import fire
 from peft import PeftModel
-from transformers import AutoModel, AutoProcessor, AutoTokenizer
+from transformers import AutoModel, AutoProcessor, AutoTokenizer, Qwen2_5OmniThinkerForConditionalGeneration
 
 
 def merge_lora(
@@ -31,7 +31,7 @@ def merge_lora(
 ):
     """Load the original model, tokenizer, and processor configuration, merge the LoRA weights.
 
-    for a specified submodule, and save the final merged model along with its configurations.
+    For a specified submodule, and save the final merged model along with its configurations.
 
     Args:
         base_model_path (str): Path to the original model directory.
@@ -86,5 +86,47 @@ def merge_lora(
         print(f"File '{extra_file}' not found in {base_model_path}, skipping copy.")
 
 
+def save_full_model(
+    saved_thinker_path: str,
+    base_model_path: str,
+    save_path: str,
+    extra_file: str = "spk_dict.pt",
+):
+    """Load the saved thinker module and the original model, replace the thinker in the original model.
+
+    Then save the complete model along with its tokenizer and processor configuration.
+
+    Args:
+        saved_thinker_path (str): Path to the saved thinker weights.
+        base_model_path (str): Directory path of the original model.
+        save_path (str): Directory where the final complete model will be saved.
+        extra_file (str): Name of the extra file to be copied (default: "spk_dict.pt").
+    """
+    # Load the thinker module
+    thinker = Qwen2_5OmniThinkerForConditionalGeneration.from_pretrained(saved_thinker_path, device_map="cpu")
+    # Load the original model
+    base_model = AutoModel.from_pretrained(base_model_path, device_map="cpu")
+    # Replace the thinker module in the original model
+    base_model.thinker = thinker
+
+    # Load the processor and tokenizer
+    processor = AutoProcessor.from_pretrained(base_model_path, trust_remote_code=True)
+    tokenizer = AutoTokenizer.from_pretrained(base_model_path, trust_remote_code=True)
+
+    # Save the complete model along with its configurations
+    base_model.save_pretrained(save_path)
+    tokenizer.save_pretrained(save_path)
+    processor.save_pretrained(save_path)
+    print(f"Complete model, tokenizer, and processor configuration have been saved to {save_path}.")
+
+    source_file = os.path.join(base_model_path, extra_file)
+    target_file = os.path.join(save_path, extra_file)
+    if os.path.exists(source_file):
+        shutil.copy(source_file, target_file)
+        print(f"File '{extra_file}' copied from {base_model_path} to {save_path}.")
+    else:
+        print(f"File '{extra_file}' not found in {base_model_path}, skipping copy.")
+
+
 if __name__ == "__main__":
-    fire.Fire(merge_lora)
+    fire.Fire({"save_full": save_full_model, "merge_lora": merge_lora})
diff --git a/src/llamafactory/data/collator.py b/src/llamafactory/data/collator.py
index 93958892..ca5d5492 100644
--- a/src/llamafactory/data/collator.py
+++ b/src/llamafactory/data/collator.py
@@ -203,7 +203,6 @@ class MultiModalDataCollatorForSeq2Seq(DataCollatorForSeq2Seq):
 
                 delta0 = (1 - rope_index_kwargs["attention_mask"]).sum(dim=-1).unsqueeze(1)
                 # avoid conflict
-                rope_index_kwargs["second_per_grids"] = mm_inputs.get("video_second_per_grid", None)
                 new_position_ids, rope_deltas = self.model.get_rope_index(**rope_index_kwargs)
                 features["position_ids"], features["rope_deltas"] = (
                     new_position_ids.clone(),
diff --git a/src/llamafactory/data/mm_plugin.py b/src/llamafactory/data/mm_plugin.py
index 85ce0bd3..aae240b3 100644
--- a/src/llamafactory/data/mm_plugin.py
+++ b/src/llamafactory/data/mm_plugin.py
@@ -1405,7 +1405,7 @@ class Qwen2OmniPlugin(Qwen2VLPlugin):
                             video_grid_thw[num_video_tokens][2] // self.image_processor.merge_size,
                         )
                         .flatten()
-                        * mm_inputs["video_second_per_grid"][num_video_tokens]
+                        * mm_inputs["second_per_grid_ts"][num_video_tokens]
                         * 25  # FIXME hardcode of position_id_per_seconds=25
                     ).long()
                     t_ntoken_per_chunk = 50  # FIXME hardcode: [25 * 2]
diff --git a/src/llamafactory/model/loader.py b/src/llamafactory/model/loader.py
index 5360a69a..e370abfc 100644
--- a/src/llamafactory/model/loader.py
+++ b/src/llamafactory/model/loader.py
@@ -157,7 +157,7 @@ def load_model(
                 model = load_class.from_config(config, trust_remote_code=model_args.trust_remote_code)
             else:
                 model = load_class.from_pretrained(**init_kwargs)
-                if load_class is AutoModelForTextToWaveform:
+                if getattr(model.config, "model_type", None) == "qwen2_5_omni":
                     model = model.thinker  # use part of Omni model
 
         if model_args.mixture_of_depths == "convert":